IL_7O7Z_340

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAGUCGG*CUGU(OMC)

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_340 not in the Motif Atlas

Homologous match to IL_8C3A_484

Geometric discrepancy: 0.0591

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|G|2690
7O7Z|1|B5|G|2691
7O7Z|1|B5|A|2692
7O7Z|1|B5|A|2693
7O7Z|1|B5|G|2694
7O7Z|1|B5|U|2695
7O7Z|1|B5|C|2696
7O7Z|1|B5|G|2697
7O7Z|1|B5|G|2698
*
7O7Z|1|B5|C|3569
7O7Z|1|B5|U|3570
7O7Z|1|B5|G|3571
7O7Z|1|B5|U|3572
7O7Z|1|B5|OMC|3573

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23