IL_7O7Z_343

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AGACA*UCGUUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|A|3677
7O7Z|1|B5|G|3678
7O7Z|1|B5|A|3679
7O7Z|1|B5|C|3680
7O7Z|1|B5|A|3681
*
7O7Z|1|B5|U|3791
7O7Z|1|B5|C|3792
7O7Z|1|B5|G|3793
7O7Z|1|B5|U|3794
7O7Z|1|B5|U|3795
7O7Z|1|B5|U|3796

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Bi

60S ribosomal protein L36