3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
(PSU)UG*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_348 not in the Motif Atlas
Homologous match to IL_8P9A_331
Geometric discrepancy: 0.3256
The information below is about IL_8P9A_331
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_07039.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

7O7Z|1|B5|PSU|4149
7O7Z|1|B5|U|4150
7O7Z|1|B5|G|4151
*
7O7Z|1|B5|U|4185
7O7Z|1|B5|G|4186

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BI
60S ribosomal protein L10

Coloring options:


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