IL_7O7Z_348
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (PSU)UG*UG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_348 not in the Motif Atlas
- Homologous match to IL_8P9A_331
- Geometric discrepancy: 0.3256
- The information below is about IL_8P9A_331
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07039.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
7O7Z|1|B5|PSU|4149
7O7Z|1|B5|U|4150
7O7Z|1|B5|G|4151
*
7O7Z|1|B5|U|4185
7O7Z|1|B5|G|4186
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BI
- 60S ribosomal protein L10
Coloring options: