IL_7O81_012

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

U(OMU)CC(PSU)U(OMU)G*CAUUCGA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|U|115
7O81|1|A2|OMU|116
7O81|1|A2|C|117
7O81|1|A2|C|118
7O81|1|A2|PSU|119
7O81|1|A2|U|120
7O81|1|A2|OMU|121
7O81|1|A2|G|122
*
7O81|1|A2|C|343
7O81|1|A2|A|344
7O81|1|A2|U|345
7O81|1|A2|U|346
7O81|1|A2|C|347
7O81|1|A2|G|348
7O81|1|A2|A|349

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11