IL_7O81_013

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUACUU*AUGCCGAC

Length

14 nucleotides

Bulged bases

7O81|1|A2|C|142, 7O81|1|A2|U|143

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|G|130
7O81|1|A2|U|140
7O81|1|A2|A|141
7O81|1|A2|C|142
7O81|1|A2|U|143
7O81|1|A2|U|144
*
7O81|1|A2|A|175
7O81|1|A2|U|176
7O81|1|A2|G|177
7O81|1|A2|C|178
7O81|1|A2|C|179
7O81|1|A2|G|180
7O81|1|A2|A|181
7O81|1|A2|C|182

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BW

eL24