IL_7O81_049

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAC*GUUUU

Length

9 nucleotides

Bulged bases

7O81|1|A2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_049 not in the Motif Atlas

Homologous match to IL_4V88_429

Geometric discrepancy: 0.1002

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7O81|1|A2|G|925
7O81|1|A2|G|926
7O81|1|A2|A|927
7O81|1|A2|C|928
*
7O81|1|A2|G|1015
7O81|1|A2|U|1016
7O81|1|A2|U|1017
7O81|1|A2|U|1018
7O81|1|A2|U|1019

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Am

uS15

Chain Bc

eL30