IL_7O81_070

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

A(OMU)UG*CUCGAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|A|1288
7O81|1|A2|OMU|1289
7O81|1|A2|U|1290
7O81|1|A2|G|1291
*
7O81|1|A2|C|1310
7O81|1|A2|U|1311
7O81|1|A2|C|1312
7O81|1|A2|G|1313
7O81|1|A2|A|1314
7O81|1|A2|U|1315

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

uS14

Chain Aj

Ribosomal protein eS10

Chain Al

40S ribosomal protein S12