IL_7O81_075
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- C(4AC)G*CA(OMG)G
- Length
- 7 nucleotides
- Bulged bases
- 7O81|1|A2|A|1490
- QA status
- Modified nucleotides: 4AC, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_075 not in the Motif Atlas
- Geometric match to IL_6IA2_004
- Geometric discrepancy: 0.1421
- The information below is about IL_6IA2_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7O81|1|A2|C|1337
7O81|1|A2|4AC|1338
7O81|1|A2|G|1339
*
7O81|1|A2|C|1489
7O81|1|A2|A|1490
7O81|1|A2|OMG|1491
7O81|1|A2|G|1492
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AJ
- Transfer RNA; tRNA
- Chain Ab
- Ribosomal protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- uS9
- Chain At
- 40S ribosomal protein uS10
Coloring options: