IL_7O81_078

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAUGCUAA*U(PSU)A(OMG)AGG

Length

15 nucleotides

Bulged bases

7O81|1|A2|U|1398

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|C|1396
7O81|1|A2|A|1397
7O81|1|A2|U|1398
7O81|1|A2|G|1399
7O81|1|A2|C|1400
7O81|1|A2|U|1401
7O81|1|A2|A|1402
7O81|1|A2|A|1403
*
7O81|1|A2|U|1445
7O81|1|A2|PSU|1446
7O81|1|A2|A|1447
7O81|1|A2|OMG|1448
7O81|1|A2|A|1449
7O81|1|A2|G|1450
7O81|1|A2|G|1451

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ac

40S ribosomal protein S3

Chain Ap

uS9

Chain Aq

40S ribosomal protein eS17

Chain At

40S ribosomal protein uS10