IL_7O81_079

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUAG*CU(OMU)CU

Length

10 nucleotides

Bulged bases

7O81|1|A2|C|1404, 7O81|1|A2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_079 not in the Motif Atlas

Homologous match to IL_8CRE_459

Geometric discrepancy: 0.2473

The information below is about IL_8CRE_459

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|A2|A|1403
7O81|1|A2|C|1404
7O81|1|A2|U|1405
7O81|1|A2|A|1406
7O81|1|A2|G|1407
*
7O81|1|A2|C|1441
7O81|1|A2|U|1442
7O81|1|A2|OMU|1443
7O81|1|A2|C|1444
7O81|1|A2|U|1445

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

RACK1

Chain Ap

uS9

Chain At

40S ribosomal protein uS10