IL_7O81_083
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_083 not in the Motif Atlas
- Geometric match to IL_3SZX_002
- Geometric discrepancy: 0.1172
- The information below is about IL_3SZX_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7O81|1|A2|A|1538
7O81|1|A2|C|1539
7O81|1|A2|U|1540
*
7O81|1|A2|A|1595
7O81|1|A2|U|1596
7O81|1|A2|U|1597
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ae
- Ribosomal protein S5
- Chain Ap
- uS9
- Chain Ar
- 40S ribosomal protein S18
- Chain As
- Ribosomal protein eS19
- Chain Ay
- 40S ribosomal protein S25
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