IL_7O81_088
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(OMC)CC*GUA(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_088 not in the Motif Atlas
- Homologous match to IL_8P9A_453
- Geometric discrepancy: 0.1136
- The information below is about IL_8P9A_453
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.4
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7O81|1|A2|G|1703
7O81|1|A2|OMC|1704
7O81|1|A2|C|1705
7O81|1|A2|C|1706
*
7O81|1|A2|G|1830
7O81|1|A2|U|1831
7O81|1|A2|A|1832
7O81|1|A2|6MZ|1833
7O81|1|A2|C|1834
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AH
- Coronavirus frameshifting stimulation element
- Chain AT
- Transfer RNA; tRNA
- Chain Az
- 60s ribosomal protein l41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
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