3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGAAAC*GUGGAUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O81_119 not in the Motif Atlas
Homologous match to IL_5TBW_015
Geometric discrepancy: 0.0993
The information below is about IL_5TBW_015
Detailed Annotation
Triple sheared with non-canonical cWW
Broad Annotation
Triple sheared
Motif group
IL_66414.7
Basepair signature
cWW-L-R-tSH-tSH-tHS-cWW-cWW
Number of instances in this motif group
7

Unit IDs

7O81|1|B5|G|415
7O81|1|B5|U|416
7O81|1|B5|G|417
7O81|1|B5|A|418
7O81|1|B5|A|419
7O81|1|B5|A|420
7O81|1|B5|C|421
*
7O81|1|B8|G|13
7O81|1|B8|U|14
7O81|1|B8|G|15
7O81|1|B8|G|16
7O81|1|B8|A|17
7O81|1|B8|U|18
7O81|1|B8|C|19

Current chains

Chain B5
28S rRNA
Chain B8
5.8S rRNA

Nearby chains

Chain BC
60S ribosomal protein L4
Chain BP
uL22
Chain Be
eL32

Coloring options:


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