IL_7O81_137

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

7O81|1|B5|A|831, 7O81|1|B5|A|834, 7O81|1|B5|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|A|726
7O81|1|B5|A|727
7O81|1|B5|G|728
7O81|1|B5|G|729
*
7O81|1|B5|C|827
7O81|1|B5|A|828
7O81|1|B5|G|829
7O81|1|B5|C|830
7O81|1|B5|A|831
7O81|1|B5|G|832
7O81|1|B5|C|833
7O81|1|B5|A|834
7O81|1|B5|G|835
7O81|1|B5|C|836
7O81|1|B5|U|837

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein L18a