IL_7O81_143

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GCUCG

Length

8 nucleotides

Bulged bases

7O81|1|B5|C|1105, 7O81|1|B5|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_143 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2527

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7O81|1|B5|C|997
7O81|1|B5|U|998
7O81|1|B5|C|999
*
7O81|1|B5|G|1104
7O81|1|B5|C|1105
7O81|1|B5|U|1106
7O81|1|B5|C|1107
7O81|1|B5|G|1108

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain Bb

60S ribosomal protein L29