IL_7O81_153

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_153 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1532

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7O81|1|B5|C|1386
7O81|1|B5|G|1387
7O81|1|B5|A|1388
7O81|1|B5|G|1389
*
7O81|1|B5|C|1405
7O81|1|B5|G|1406
7O81|1|B5|A|1407
7O81|1|B5|G|1408

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Ribosomal protein L18