IL_7O81_156

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_156 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.2092

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7O81|1|B5|C|1429
7O81|1|B5|G|1430
7O81|1|B5|C|1431
*
7O81|1|B5|G|1444
7O81|1|B5|G|1445

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42