IL_7O81_167

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCGCAACCCCG*CG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|C|1649
7O81|1|B5|U|1650
7O81|1|B5|C|1651
7O81|1|B5|G|1652
7O81|1|B5|C|1653
7O81|1|B5|A|1654
7O81|1|B5|A|1655
7O81|1|B5|C|1656
7O81|1|B5|C|1657
7O81|1|B5|C|1658
7O81|1|B5|C|1659
7O81|1|B5|G|1660
*
7O81|1|B5|C|1780
7O81|1|B5|G|1781

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30

Chain BQ

Ribosomal protein L18

Chain BT

eL21

Chain Bb

60S ribosomal protein L29