IL_7O81_184

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7O81|1|B5|G|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_184 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3635

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7O81|1|B5|G|1912
7O81|1|B5|U|1913
7O81|1|B5|G|1914
7O81|1|B5|G|1915
7O81|1|B5|C|1916
*
7O81|1|B5|G|1928
7O81|1|B5|A|1929
7O81|1|B5|A|1930
7O81|1|B5|U|1931
7O81|1|B5|C|1932

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

Ribosomal protein L12