IL_7O81_200
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CGUG
- Length
- 7 nucleotides
- Bulged bases
- 7O81|1|B5|U|2530
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_200 not in the Motif Atlas
- Geometric match to IL_4V9F_076
- Geometric discrepancy: 0.1072
- The information below is about IL_4V9F_076
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_85599.2
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
7O81|1|B5|C|2489
7O81|1|B5|A|2490
7O81|1|B5|G|2491
*
7O81|1|B5|C|2528
7O81|1|B5|G|2529
7O81|1|B5|U|2530
7O81|1|B5|G|2531
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bg
- 60S ribosomal protein L34
Coloring options: