IL_7O81_230

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

7O81|1|B5|U|3646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_230 not in the Motif Atlas

Homologous match to IL_8C3A_098

Geometric discrepancy: 0.1263

The information below is about IL_8C3A_098

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7O81|1|B5|G|3645
7O81|1|B5|U|3646
7O81|1|B5|U|3647
*
7O81|1|B5|A|4134
7O81|1|B5|C|4135

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BK

Replicase polyprotein 1ab

Chain Ba

60S ribosomal protein L27a

Chain Bb

60S ribosomal protein L29