IL_7O81_236

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|G|3687
7O81|1|B5|G|3688
7O81|1|B5|U|3689
7O81|1|B5|G|3690
7O81|1|B5|U|3691
7O81|1|B5|A|3692
7O81|1|B5|G|3693
7O81|1|B5|A|3694
7O81|1|B5|A|3695
7O81|1|B5|U|3696
7O81|1|B5|A|3697
7O81|1|B5|A|3698
*
7O81|1|B5|U|3783
7O81|1|B5|A|3784
7O81|1|B5|C|3785

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Ae

Ribosomal protein S5

Chain Ay

40S ribosomal protein S25

Chain Bv

Ribosomal protein uL1