IL_7O81_244

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7O81|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_244 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.2026

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7O81|1|B5|G|4037
7O81|1|B5|A|4038
7O81|1|B5|PSU|4039
7O81|1|B5|C|4040
*
7O81|1|B5|G|4062
7O81|1|B5|A|4063
7O81|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BT

eL21

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42