IL_7O81_251

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_251 not in the Motif Atlas

Homologous match to IL_5TBW_107

Geometric discrepancy: 0.1296

The information below is about IL_5TBW_107

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

7O81|1|B5|C|4199
7O81|1|B5|G|4200
*
7O81|1|B5|U|4272
7O81|1|B5|G|4273
7O81|1|B5|G|4274

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AJ

Transfer RNA; tRNA

Chain BB

Ribosomal protein L3

Chain BK

Replicase polyprotein 1ab