IL_7O81_260

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7O81|1|B5|A|4294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_260 not in the Motif Atlas

Geometric match to IL_1U9S_001

Geometric discrepancy: 0.2821

The information below is about IL_1U9S_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7O81|1|B5|C|4283
7O81|1|B5|G|4284
*
7O81|1|B5|C|4293
7O81|1|B5|A|4294
7O81|1|B5|G|4295

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AJ

Transfer RNA; tRNA

Chain BA

Ribosomal protein uL2

Chain BI

60S ribosomal protein L10

Chain BK

Replicase polyprotein 1ab