IL_7O81_277

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAUG*CUCGC

Length

11 nucleotides

Bulged bases

7O81|1|B5|U|4634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|G|4630
7O81|1|B5|A|4631
7O81|1|B5|A|4632
7O81|1|B5|A|4633
7O81|1|B5|U|4634
7O81|1|B5|G|4635
*
7O81|1|B5|C|4663
7O81|1|B5|U|4664
7O81|1|B5|C|4665
7O81|1|B5|G|4666
7O81|1|B5|C|4667

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BO

Ribosomal protein L13a