IL_7O81_284

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UC

Length

5 nucleotides

Bulged bases

7O81|1|B5|C|4752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_284 not in the Motif Atlas

Homologous match to IL_8C3A_140

Geometric discrepancy: 0.3523

The information below is about IL_8C3A_140

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7O81|1|B5|G|4751
7O81|1|B5|C|4752
7O81|1|B5|A|4753
*
7O81|1|B5|U|4774
7O81|1|B5|C|4775

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BW

eL24