IL_7O81_303
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAA(PSU)(PSU)*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_303 not in the Motif Atlas
- Homologous match to IL_8C3A_503
- Geometric discrepancy: 0.3877
- The information below is about IL_8C3A_503
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44416.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|A2|G|808
7O81|1|A2|A|809
7O81|1|A2|A|810
7O81|1|A2|A|811
7O81|1|A2|A|812
7O81|1|A2|A|813
7O81|1|A2|A|814
7O81|1|A2|PSU|815
7O81|1|A2|PSU|816
*
7O81|1|A2|A|850
7O81|1|A2|C|851
7O81|1|A2|C|852
7O81|1|A2|G|853
7O81|1|A2|C|854
7O81|1|A2|A|855
7O81|1|A2|G|856
7O81|1|A2|C|857
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- Ribosomal protein eS4
- Chain Ai
- Ribosomal protein S9 (Predicted)
- Chain Ak
- 40S ribosomal protein S11
- Chain Av
- Ribosomal protein S15a
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