IL_7O81_319

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7O81|1|B5|U|1132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_319 not in the Motif Atlas

Geometric match to IL_7PMQ_002

Geometric discrepancy: 0.3986

The information below is about IL_7PMQ_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7O81|1|B5|G|1131
7O81|1|B5|U|1132
7O81|1|B5|C|1133
*
7O81|1|B5|G|1207
7O81|1|B5|C|1208

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bb

60S ribosomal protein L29