IL_7O9K_040

3D structure

PDB id

7O9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome large subunit assembly intermediate with MTERF4-NSUN4, MRM2, MTG1, the MALSU module, GTPBP5 and mtEF-Tu

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

7O9K|1|A|G|3063, 7O9K|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O9K_040 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1324

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7O9K|1|A|A|2997
7O9K|1|A|U|2998
7O9K|1|A|C|2999
*
7O9K|1|A|G|3061
7O9K|1|A|U|3062
7O9K|1|A|G|3063
7O9K|1|A|A|3064
7O9K|1|A|U|3065

Current chains

Chain A

16S rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain G

Mitochondrial ribosome-associated GTPase 2