IL_7OAX_011
3D structure
- PDB id
- 7OAX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Chili RNA aptamer in complex with DMHBO+
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.24 Å
Loop
- Sequence
- GAGGGG*CGGUC
- Length
- 11 nucleotides
- Bulged bases
- 7OAX|1|D|G|14, 7OAX|1|D|U|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7OAX_011 not in the Motif Atlas
- Geometric match to IL_7OAX_002
- Geometric discrepancy: 0.0547
- The information below is about IL_7OAX_002
- Detailed Annotation
- Part of G-quadruplex
- Broad Annotation
- No text annotation
- Motif group
- IL_73759.1
- Basepair signature
- cWW-cSH-tHS-cWH-cHW-cWW
- Number of instances in this motif group
- 1
Unit IDs
7OAX|1|D|G|10
7OAX|1|D|A|11
7OAX|1|D|G|12
7OAX|1|D|G|13
7OAX|1|D|G|14
7OAX|1|D|G|15
*
7OAX|1|D|C|40
7OAX|1|D|G|41
7OAX|1|D|G|42
7OAX|1|D|U|43
7OAX|1|D|C|44
Current chains
- Chain D
- Chili RNA Aptamer
Nearby chains
- Chain A
- Chili RNA Aptamer
- Chain B
- Chili RNA Aptamer
- Chain C
- Chili RNA Aptamer
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