IL_7ODE_006

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_006 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.0998

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7ODE|1|I|G|188
7ODE|1|I|G|189
7ODE|1|I|A|190
7ODE|1|I|A|191
7ODE|1|I|C|192
7ODE|1|I|U|193
7ODE|1|I|G|194
*
7ODE|1|I|C|201
7ODE|1|I|U|202
7ODE|1|I|A|203
7ODE|1|I|A|204
7ODE|1|I|G|205
7ODE|1|I|U|206
7ODE|1|I|A|207
7ODE|1|I|C|208

Current chains

Chain I

23S rRNA

Nearby chains