IL_7ODE_009

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_009 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.3542

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7ODE|1|I|C|274
7ODE|1|I|C|275
7ODE|1|I|U|276
7ODE|1|I|G|277
7ODE|1|I|A|278
7ODE|1|I|A|279
7ODE|1|I|U|280
7ODE|1|I|C|281
*
7ODE|1|I|G|359
7ODE|1|I|U|360
7ODE|1|I|G|361
7ODE|1|I|A|362
7ODE|1|I|G|363

Current chains

Chain I

23S rRNA

Nearby chains