IL_7ODE_066

3D structure

PDB id

7ODE (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome LiCl core particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

7ODE|1|I|A|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODE_066 not in the Motif Atlas

Geometric match to IL_4WF9_112

Geometric discrepancy: 0.2824

The information below is about IL_4WF9_112

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

7ODE|1|I|G|2838
7ODE|1|I|G|2839
*
7ODE|1|I|U|2878
7ODE|1|I|A|2879
7ODE|1|I|C|2880

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17