IL_7ODR_010

3D structure

PDB id

7ODR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State A of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

7ODR|1|A|A|1974

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODR_010 not in the Motif Atlas

Homologous match to IL_5J7L_261

Geometric discrepancy: 0.1519

The information below is about IL_5J7L_261

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

7ODR|1|A|A|1929
7ODR|1|A|C|1930
*
7ODR|1|A|G|1973
7ODR|1|A|A|1974
7ODR|1|A|U|1975

Current chains

Chain A

16S mitochondrial rRNA, DNA (31-MER),16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial