IL_7ODS_050

3D structure

PDB id

7ODS (explore in PDB, NAKB, or RNA 3D Hub)

Description

State B of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAU*AAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODS_050 not in the Motif Atlas

Geometric match to IL_4V9F_003

Geometric discrepancy: 0.363

The information below is about IL_4V9F_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7ODS|1|A|U|2743
7ODS|1|A|U|2744
7ODS|1|A|A|2745
7ODS|1|A|U|2746
*
7ODS|1|A|A|2802
7ODS|1|A|A|2803
7ODS|1|A|A|2804

Current chains

Chain A

16S mitochondrial rRNA, DNA (30-MER),16S mitochondrial rRNA

Nearby chains

Chain D

39S ribosomal protein L2, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial

Chain y

Transcription termination factor 4, mitochondrial