IL_7ODT_039
3D structure
- PDB id
- 7ODT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C of the human mitoribosomal large subunit assembly intermediate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUAG*CAACA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ODT_039 not in the Motif Atlas
- Homologous match to IL_5J7L_338
- Geometric discrepancy: 0.2484
- The information below is about IL_5J7L_338
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7ODT|1|A|U|2953
7ODT|1|A|C|2954
7ODT|1|A|U|2955
7ODT|1|A|A|2956
7ODT|1|A|G|2957
*
7ODT|1|A|C|2967
7ODT|1|A|A|2968
7ODT|1|A|A|2969
7ODT|1|A|C|2970
7ODT|1|A|A|2971
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 4
- 39S ribosomal protein L36, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain l
- 39S ribosomal protein L54, mitochondrial
- Chain t
- Mitochondrial ribosome-associated GTPase 2
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