IL_7ODT_042

3D structure

PDB id

7ODT (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C of the human mitoribosomal large subunit assembly intermediate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

7ODT|1|A|A|3059, 7ODT|1|A|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ODT_042 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1229

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7ODT|1|A|C|2999
7ODT|1|A|A|3000
*
7ODT|1|A|U|3058
7ODT|1|A|A|3059
7ODT|1|A|C|3060
7ODT|1|A|G|3061

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain K

39S ribosomal protein L13, mitochondrial

Chain t

Mitochondrial ribosome-associated GTPase 2