IL_7OF1_007

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

7OF1|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF1_007 not in the Motif Atlas

Geometric match to IL_5TBW_007

Geometric discrepancy: 0.1382

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7OF1|1|1|A|123
7OF1|1|1|U|124
*
7OF1|1|1|A|144
7OF1|1|1|G|145
7OF1|1|1|U|146
7OF1|1|1|U|147
7OF1|1|1|G|148
7OF1|1|1|U|149

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A