3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GG*UUUC
Length
6 nucleotides
Bulged bases
7OF1|1|1|U|1820, 7OF1|1|1|U|1821
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OF1_056 not in the Motif Atlas
Geometric match to IL_4YAZ_007
Geometric discrepancy: 0.2873
The information below is about IL_4YAZ_007
Detailed Annotation
Multiple bulged bases
Broad Annotation
Multiple bulged bases
Motif group
IL_82107.4
Basepair signature
cWW-cWW
Number of instances in this motif group
30

Unit IDs

7OF1|1|1|G|1623
7OF1|1|1|G|1624
*
7OF1|1|1|U|1819
7OF1|1|1|U|1820
7OF1|1|1|U|1821
7OF1|1|1|C|1822

Current chains

Chain 1
25S rRNA

Nearby chains

Chain g
60S ribosomal protein L34-A
Chain k
60S ribosomal protein L38

Coloring options:


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