3D structure

PDB id
7OF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUCC*GC
Length
6 nucleotides
Bulged bases
7OF1|1|1|C|2772
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7OF1_083 not in the Motif Atlas
Homologous match to IL_5TBW_101
Geometric discrepancy: 0.5737
The information below is about IL_5TBW_101
Detailed Annotation
Single stack bend with bulge
Broad Annotation
Single stack bend with bulge
Motif group
IL_39137.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

7OF1|1|1|G|2770
7OF1|1|1|U|2771
7OF1|1|1|C|2772
7OF1|1|1|C|2773
*
7OF1|1|1|G|2787
7OF1|1|1|C|2788

Current chains

Chain 1
25S rRNA

Nearby chains

Chain L
60S ribosomal protein L13-A
Chain a
60S ribosomal protein L28

Coloring options:


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