IL_7OF4_046

3D structure

PDB id

7OF4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

7OF4|1|A|G|3063, 7OF4|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF4_046 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1295

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

7OF4|1|A|A|2997
7OF4|1|A|U|2998
7OF4|1|A|C|2999
*
7OF4|1|A|G|3061
7OF4|1|A|U|3062
7OF4|1|A|G|3063
7OF4|1|A|A|3064
7OF4|1|A|U|3065

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial