IL_7OF5_042

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

7OF5|1|A|A|3059, 7OF5|1|A|C|3060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF5_042 not in the Motif Atlas

Homologous match to IL_5J7L_341

Geometric discrepancy: 0.1028

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

7OF5|1|A|C|2999
7OF5|1|A|A|3000
*
7OF5|1|A|U|3058
7OF5|1|A|A|3059
7OF5|1|A|C|3060
7OF5|1|A|G|3061

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain K

39S ribosomal protein L13, mitochondrial

Chain x

Mitochondrial ribosome-associated GTPase 2