IL_7OF7_029

3D structure

PDB id

7OF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

7OF7|1|A|C|2718, 7OF7|1|A|U|3100, 7OF7|1|A|A|3101

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF7_029 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1024

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OF7|1|A|A|2717
7OF7|1|A|C|2718
7OF7|1|A|G|2719
*
7OF7|1|A|C|3099
7OF7|1|A|U|3100
7OF7|1|A|A|3101
7OF7|1|A|U|3102

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial

Chain T

39S ribosomal protein L22, mitochondrial