IL_7OF7_043

3D structure

PDB id

7OF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

7OF7|1|A|A|3089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OF7_043 not in the Motif Atlas

Geometric match to IL_4V88_399

Geometric discrepancy: 0.2053

The information below is about IL_4V88_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7OF7|1|A|C|3078
7OF7|1|A|G|3079
*
7OF7|1|A|C|3088
7OF7|1|A|A|3089
7OF7|1|A|G|3090

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

5-methylcytosine rRNA methyltransferase NSUN4

Chain x

Mitochondrial ribosome-associated GTPase 2