IL_7OG4_042

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OG4_042 not in the Motif Atlas

Geometric match to IL_2R8S_002

Geometric discrepancy: 0.3987

The information below is about IL_2R8S_002

Detailed Annotation

UAA/GAN related

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

7OG4|1|AA|C|1500
7OG4|1|AA|A|1501
7OG4|1|AA|A|1502
7OG4|1|AA|G|1503
7OG4|1|AA|U|1504
*
7OG4|1|AA|A|1546
7OG4|1|AA|U|1547
7OG4|1|AA|A|1548
7OG4|1|AA|G|1549

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain XA

Large subunit ribosomal RNA; LSU rRNA

Chain XL

39S ribosomal protein L14, mitochondrial