IL_7OG4_087

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OG4_087 not in the Motif Atlas

Geometric match to IL_7RQB_094

Geometric discrepancy: 0.1996

The information below is about IL_7RQB_094

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform; mini C-loop

Motif group

IL_92788.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

14

Unit IDs

7OG4|1|XA|A|2946
7OG4|1|XA|U|2947
7OG4|1|XA|C|2948
*
7OG4|1|XA|G|2976
7OG4|1|XA|G|2977
7OG4|1|XA|U|2978
7OG4|1|XA|U|2979
7OG4|1|XA|U|2980

Current chains

Chain XA

16S mitochondrial rRNA

Nearby chains

Chain XI

39S ribosomal protein L10, mitochondrial

Chain XN

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial