IL_7OG4_105

3D structure

PDB id

7OG4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OG4_105 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1415

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

7OG4|1|XA|G|2470
7OG4|1|XA|G|2471
7OG4|1|XA|A|2472
7OG4|1|XA|A|2473
7OG4|1|XA|C|2474
7OG4|1|XA|U|2475
7OG4|1|XA|C|2476
7OG4|1|XA|G|2477
7OG4|1|XA|G|2478
*
7OG4|1|XA|C|2653
7OG4|1|XA|U|2654
7OG4|1|XA|G|2655
7OG4|1|XA|U|2656
7OG4|1|XA|C|2657

Current chains

Chain XA

16S mitochondrial rRNA

Nearby chains

Chain XE

39S ribosomal protein L3, mitochondrial

Chain XL

39S ribosomal protein L14, mitochondrial

Chain XQ

39S ribosomal protein L19, mitochondrial