IL_7OH3_026

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_026 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.2053

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7OH3|1|1|C|758
7OH3|1|1|U|759
7OH3|1|1|G|760
7OH3|1|1|A|761
7OH3|1|1|U|762
7OH3|1|1|G|763
*
7OH3|1|1|C|768
7OH3|1|1|G|769
7OH3|1|1|G|770
7OH3|1|1|A|771
7OH3|1|1|U|772
7OH3|1|1|G|773

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28