IL_7OH3_056

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

7OH3|1|1|U|1820, 7OH3|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7OH3_056 not in the Motif Atlas

Geometric match to IL_4YAZ_007

Geometric discrepancy: 0.2926

The information below is about IL_4YAZ_007

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_82107.4

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

7OH3|1|1|G|1623
7OH3|1|1|G|1624
*
7OH3|1|1|U|1819
7OH3|1|1|U|1820
7OH3|1|1|U|1821
7OH3|1|1|C|1822

Current chains

Chain 1

25S rRNA

Nearby chains

Chain g

60S ribosomal protein L34-A